GeoMx Whole Transcriptome Atlas
The GeoMx Whole Transcriptome Atlas (WTA) empowers to explore biology accross a tissue. The human whole transcriptome (over 18,000 protein-coding human genes) is measured in each region of interest to uncover biological changes at specific locations of the tissue. 

  • Whole transcriptome coverage with probes specific to protein coding mRNA sequences

  • Compatible with common sample types such as formalin-fixed paraffin embedded (FFPE) or fresh frozen (FF) tissue and across all human tissues types

  • Superior sensitivity to detect 1000s of unique human genes in <50 μm regions

  • Robust performance across sample types including FFPE with high concordance with RNA-seq and RNAscope™

  • Map single cell RNA-seq populations to their tissue location


 

GeoMx Whole Transcriptome Atlas

The GeoMx Whole Transcriptome Atlas delivers the maximum amount of sensitivity and confidence in each transcript through its unique probe architecture. The WTA profiles over 18,000 protein-coding human genes based on the human gene nomenclature committee (HUGO1) database cross-referenced with available mRNA sequences in the National Center for Biotechnology’s Information (NCBI) RefSeq database.

The WTA then allows to explore pathways across the whole transcriptome in defined regions of interest.

 

Learn about out Digitial Spatial Profiling (DSP) services

GeoMx Cancer Transcriptome Atlas (CTA)
The Cancer Transcriptome Atlas (CTA) is designed for comprehensive profiling of the tumor biology, tumor microenvironment, and the immune response. It covers the RNA expression of over 1,800 genes simultaneously with spatial resolution in any region of interest from a single tissue section.


  • Extensive coverage of the immune response, tissue microenvironment, tumor biology, and genes from clinically relevant genes sets such as tumor inflammation

  • Spatial measurement of single cell signatures with high sensitivity and dynamic range

  • Inclusion of genes for the Tumor Inflammation Signature, PAM50 and other clinical signatures

  • Over 100 pathways to explore all aspects of cancer and tumor biology



The CTA assay is compatible with RNAscope® and antibody visualization markers. It can also be supplemented with up to 60 additional targets of interest.

Learn about out spatial transcriptomics services


Comprehensively Annotated Pathways in the CTA

































































































































































































Adaptive Immunity  

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 
Cell Function  

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 
Signaling Pathways
T cells B cells Apoptosis AMPK Signaling
TCR & BCR Signaling Autophagy Androgen Signaling
Cancer Antigens Cell Adhesion & Motility EGFR Signaling
MHC Class I & II Antigen Presentation Cell Cycle ERBB2 Signaling
T-cell Checkpoints Cilium Assembly Estrogen Signaling
TH1, TH2, TH9, Th17, and Treg Differentiation Differentiation FGFR Signaling
DNA Damage Repair FoxO Signaling
Innate Immunity EMT GPCR Signaling
Complement System Endocytosis Hedgehog Signaling
Dendritic Cells Epigenetic Modification HIF1 Signaling
DNA & RNA Sensing Immortality & Stemness Insulin Signaling
Glycan Sensing Ion Transport JAK-STAT Signaling
Host Defense Peptides Lysosome MAPK Signaling
Inflammasomes Oxidative Stress MET Signaling
Myeloid Inflammation Phagocytosis mTOR Signaling
Neutrophil Degranulation Proteotoxic Stress Myc
NK Activity RNA Processing NO Signaling
NLR Signaling Senescence Notch Signaling
RAGE Signaling p53 Signaling
TLR Signaling Metabolism PDGF Signaling
Amino Acid Synthesis & Transport PI3K-Akt Signaling
Immune Response Arginine & Glutamine Metabolism PPAR Signaling
Chemokine Signaling Fatty Acid Oxidation & Synthesis Purinergic Signaling
Cytotoxicity Glycolysis & Glucose Transport Retinoic Acid Signaling
IL-1, IL-2, IL-6 & IL-17 Signaling Glycosylation TGF-beta Signaling
Immune Exhaustion IDH1/2 VEGF Signaling
Interferon Response Genes Lipid Metabolism Wnt Signaling
Lymphocyte Regulation & Trafficking Mitochondrial Metabolism / TCA
NF-kB Signaling Nucleotide Synthesis Physiology & Disease
Other Interleukin Signaling Pentose Phosphate Angiotensin System
Prostaglandin Inflammation Tryptophan & Kynurenine Metabolism Circadian Clock
TNF Signaling Vitamin & Cofactor Metabolism Drug Resistance
Type I, II, & III Interferon Signaling  

 

 

 

 

 
Glioma
 

 

 

 

 
Leukemia
Matrix Remodeling and Metastasis
Melanoma
Neuroendocrine Function
Prostate Cancer


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